After completing my Biomedical Sciences degree in 1989 in UFPA, in Belém – capital of Pará State, I received my M.S. degree in 1993. I completed my Ph.D. at the Post-Graduate Program of Genetics from the hematology department of the University of São Paulo (USP) in Brazil in 1996. I returned to Belém where I continued my research, focusing on human and medical genetics. In 1997, I became a professor at the Federal University of Pará (UFPA) and my main research focus was human variability of Brazilian populations in the Amazon region. In the past 10 years, I have been working with next generation sequencing (NGS) for whole genome sequencing (WGS), exome, transcriptome, etc., especially of urban and traditional individuals from the Amazon region, characterizing disease susceptibility and biomarkers in human populations. The expertise developed by our group allowed us to study the genetics of diseases such as cancer and infectious diseases. I also have explored the interaction between host and pathogen genetic components, describing the interaction between environment and cellular components (DNA, RNA and proteins). My team and I have identified important biomarkers and risk factors of neglected diseases such as leprosy, malaria and tuberculosis by NGS.
I am a statistician by training with strong interactions with the medical field since 1999. Such interactions started during my Undergrad, extended throughout the Master’s and Ph.D. programs, and consolidated with two postdoctoral training opportunities I had in the UK and Brazil (“Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis”, Nature Genetics 2014; “Comprehensive molecular characterization of muscle-invasive bladder cancer”, Cell 2017).
During my professional trajectory, I worked as an intern at Affymetrix in California, with methodologies for preprocessing SNP microarrays. Later, I developed the CRLMM algorithm, a robust and accurate genotyping algorithm for Affymetrix arrays (“Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data”, Biostatistics 2006), which uses a semi-supervised statistical learning approach to obtain genotypes at millions of genomic sites simultaneously. The algorithm was later extended for Illumina chips. I am a Bioconductor developer since 2004, responsible for more than 160 packages, including the oligo and crlmm packages, which accumulate more than 10,000 downloads per year (“Orchestrating high-throughput genomic analysis with Bioconductor”, Nature Methods 2015). The oligo package (“A framework for oligonucleotide microarray preprocessing”, Bioinformatics 2010) is the to-go tool within the Bioconductor framework for Affymetrix and Nimblegen microarray preprocessing.
I develop statistical methodologies and high-performance computational tools for the analysis of high-throughput genomic data and am deeply involved with BioConductor, being one of the pioneer developers at the project and, today, member of the Community Advisory Board at Bioconductor. The research projects I am involved with focus on the understanding of the biological mechanisms involved in epilepsy and stroke, for which I use statistical learning approaches to improve the quality of health care delivery through the neurology department at our University Hospital (“A Prediction Algorithm for Drug Response in Patients With Mesial Temporal Lobe Epilepsy Based on Clinical and Genetic Information”, PLoS One 2017). I am one of the founders of the Brazilian Initiative on Precision Medicine ( “The Brazilian Initiative on Precision Medicine (BIPMed): fostering genomic data-sharing of underrepresented populations”, npg Genomic Medicine 2020), where we generate data, discuss and implement the infra-structure required for the actual execution of Precision Medicine in Brazil, interacting with different stakeholders (including policy makers, patients, researchers and medical doctors) [“Distribution of local ancestry and evidence of adaptation in admixed populations”, Sci. Rep. 2019].
Ivo Fokkema graduated in Molecular Biology in 2002 and started in the group of Johan den Dunnen at the Leiden University Medical Center, the Netherlands, to develop the Leiden Open Variation Database (LOVD) software. It was the world's first software that could be downloaded for free and used to set up an online database to collect and share genetic data. Today, it continues to power the world's largest network of curated gene variant databases.
Ivo currently leads the LOVD project, co-chairs the HUGO Gene/Disease Specific Database Advisory Council, and is a member of the HUGO Nomenclature Standards committee, the HUGO Forum, and the HPV/GV Reporting of Sequence Variants Working Group.
Dr. Juan Llerena Jr is Consultant Clinical Genetics and Director of the Medical Genetics Centre of National Institute Fernandes Figueira, Fiocruz (Rio de Janeiro, Brazil), a maternal-infantile unit of the Brazilian Ministry of Health Department, since 1989.
He trained as a General Practitioner and Internal Medicine with special interests in the fields of dysmorphology and clinical/molecular cytogenetics.
He has co-authored over 150 articles in peer-reviewed journals.
More recently, became Director of The Reference Centre for Rare Disorders in Rio de Janeiro city, through the Fiocruz Foundation.
Dr. Miga is an Assistant Professor in the Biomolecular Engineering Department at UCSC, and an Associate Director of the UCSC Genomics Institute. In 2019, she co-founded the Telomere-to-Telomere (T2T) Consortium, an open, community-based effort to generate the first complete assembly of a human genome. Dr. Miga directs the Reference Production Center for the Human Pangenome Reference Consortium (HPRC), with the goal to broaden the human reference to represent hundreds of diverse genomes from around the world and serve as the foundation for more inclusive and equitable health care in the future. Central to Dr. Miga’s research program is the emphasis on satellite DNA biology and the use of long-read and new genome technologies to construct high-quality genetics and epigenetic maps of human peri/centromeric regions.
completed a Ph.D. in molecular medicine and I wanted to pursue a career path that combined research with disease diagnosis. I am interested in disease research, particularly the elucidation of disease susceptibility genes and setting standards for gene and variant curation. My thesis research focused on factors that differentiate metabolically healthy and unhealthy obese humans. It began with a search of microarray analyses of fat from obese patients undergoing bariatric surgery. These analyses identified the little-studied protein Hypoxia-inducible protein 2 (HIG2) as a highly fat-specific gene in human patients. My research focused on elucidating a role for HIG2 in promoting lipid deposition in liver and adipose tissue, two critical metabolic organs. I used the skills learned during my Ph.D. studies to transition to a field that directly helps patients. Thus, I joined Heidi Rehm’s research program in 2016, working as a postdoctoral fellow on the NIH-funded Clinical Genome Resource (ClinGen) program which is building authoritative resources to define the clinical relevance of genes and variants for use in precision medicine and research (Rehm et al., 2015). ClinGen is spearheading the development and implementation of evidence-based expert curation of genes and variants to meet this aim. Simultaneously, I completed a Clinical Molecular Fellowship in the Harvard Medical School Genetics Training Program and am now a board-certified clinical molecular geneticist and assistant professor at Geisinger. My clinical fellowship focused on exome and genome analysis of rare disease cases. In my role at Geisinger, I continue to collaborate with ClinGen and direct the ClinGen Biocuration Core based at the Broad Institute. This core contains staff curators who are deployed to ClinGen’s 93 gene and variant curation expert panels. Through my work directing this Core, I have trained 15 research assistants to perform gene and variant curation in a range of different disease areas. While much of my initial focus was in the hearing loss domain, I currently collaborate with 15 expert panels as a framework expert. I have coordinated and led specifications in the Congenital Myopathies Variant Curation Expert Panel (VCEP), along with Co-Investigator Dr. Amanda Lindy. I am also a Clinical Lab Director for the Geisinger MyCode-Regeneron DiscovEHR collaboration (MyCode) project and participate in standard setting for variant pipelines and variant classification for confirmation and return of results to MyCode participants. My work with ClinGen expert panels and population screening in MyCode have set me up to succeed in investigating the prevalence, penetrance, and phenotypic variability of Charcot-Marie-Tooth disease in population-based cohorts, particularly the variant interpretation and gene list creation.
Ricardo Verdugo is a Veterinary Medic from the University of Chile (2001). He obtained a Ph.D. in Genetics from the University of California Davis (2007) after completing his thesis work on fine-mapping of QTLs for obesity in mice. Postdoc in Computational Biology in The Jackson Laboratories with Dr. Gary Churchill, where he applied statistical analysis of transcriptomic data from mouse crosses for the inference of gene networks underlying complex traits. A second postdoc at INSERM, where he applied Systems Genetics to human population studies of cardiovascular disease. From 2012 to 2022, he was Assistant Professor at the Human Genetics Program of the University of Chile. He is the Director of the ChileGenomico Project, charactering the genetic diversity of the Chilean population and its relevance for health. He also directs a genomics and a bioinformatics laboratory and leads U-Genoma (ugenoma.cl), a national academic network to support research and graduate level education in genetics, genomics and bioinformatics and the C19-GenoNet multi-centric COVID-19 cohort. Since July 2022, he is group leader at the School of Medicine of the University of Talca, in Talca, Chile.
Robert Kuhn received his PhD in biochemistry and molecular biology at the University of California Santa Barbara, where he studied the centromeres of yeast. Following a postdoctoral fellowship studying photoreceptor genes in plants at UC Berkeley, he taught biochemistry, genetics and molecular biology at the University of California Santa Cruz.
He joined the UCSC Genome Browser project in 2003, retiring as Associate Director in 2022. The Genome Browser is a widely used visualization tool giving access to the genomes of human, model organisms and more than one hundred other animals. Dr. Kuhn's responsibilities included influencing the growth of the Browser, identifying important datasets for inclusion into the Browser and enabling researchers worldwide through teaching the Genome Browser in videos and workshops and seminars, now more than 300 in number (https://bit.ly/kuhnTalks). He has a particular interest in the support of clinical geneticists via online databases and tools for interpreting data.
Dr Kuhn is now operating as Robert Kuhn Consulting, where he continues to offer Browser trainings, bioinformatics consultation and educational materials.
Researcher at National Center for Research in Energy and Materials (CNPEM)/Brazil. Master (2012) and Ph.D. (2017) in Neuroscience at University of Campinas. Postdoctoral fellow at University of California (UCSD). Research focuses on neurodevelopmental diseases, epilepsy, molecular biology, and human stem cell-derived 3D models.
Sonia Margarit, MS. Certified Genetic Counselor graduated from the Sarah Lawrence Genetic Counseling Program in 1997. She worked as a genetic counselor in the areas of prenatal obstetrics and pediatrics at Elmhurst Hospital / Mt. New York Sinai School of Medicine.
In 2004 she moved to Santiago, Chile, to join the genetics team of the Genetics and Genomics Center of the Clínica Alemana Universidad del Desarrollo, becoming the first and only genetic counselor in Chile. Since then, she has taught genetics in Medicine and Health Careers and became an associate professor at the Faculty of Medicine in 2015.
She collaborated in the development of the Breast High-Risk Center at the Clínica Alemana where she worked as a genetic counselor advising hundreds of families at high risk of hereditary cancer. She is currently, providing genetic counseling to patients and families with hereditary syndromes in adults and pediatrics department.
Recognizing the lack of training in genetic counseling she has been keen endeavor promoting the need for training health care providers in genetic counseling. She has collaborated with the development and taught the genetic counseling course in hereditary cancer at the University of Chile (Medichi) at Clínica las Condes.
In 2022, with the support of the Faculty of Medicine and Nursing of Universidad del Desarrollo she helped developed and is the Director of the first genetic counseling online certificate course in Chile.
I combine advanced computational methods with experimental validation techniques in high-resolution genetic mapping populations—an integrative approach called ‘systems genetics’—to elucidate the gene regulatory architecture governing cell fate decisions during early development and quantify the effects of environmental exposures on these processes. My research takes advantage of the powerful Diversity Outbred (DO) and Collaborative Cross (CC) mouse populations, complementary reservoirs of natural genetic perturbations that segregate high genetic diversity with a balanced population structure ideal for high-resolution genetic mapping, to characterize the effects of genetic and environmental perturbations on multiple layers of gene regulation and infer predictive network models underlying cell fate decisions and exposure health risks. This systems genetic approach has enabled me to (1) define the consequences of genetic variation on transcript and protein abundance in the adult liver, and in so doing discover that pervasive transcriptional variation is largely constrained in homeostatic adult tissues at the level of protein abundance by the relative stoichiometry of protein binding partners and complex members, and (2) predict and validate genetic variants that influence multiple layers of gene regulation and affect maintenance of ground state pluripotency in mouse embryonic stem cells. Through my training and research over the past two decades, I have purposefully acquired expertise in developmental biology, complex trait genetics, genomics and proteomics, bioinformatics, and statistics, with the goal of applying this interdisciplinary skillset to dissect and manipulate the gene regulatory networks that drive cell fate processes.
Prof Zilfalil Bin Alwi Professor Zilfalil Bin Alwi is the UNESCO Chair on Human Genetics of Thalassemia. He is a senior consultant Pediatrician & Clinical Geneticist at the Human Genome Centre, School of Medical Sciences, Universiti Sains Malaysia (USM), Kota Bharu, Malaysia.
He received his specialist training in Pediatrics (Master of Medicine (Pediatrics)) from the same university and later went to study at University of Glasgow, United Kingdom (UK) where he obtained a MSc in Medical Genetics and then to University of Aston, UK where he obtained a PhD in Pharmacogenetics.
Prof Zilfalil is the founder and head of the Malaysian Node of the Human Variome Project (MyHVP). He is a member of the Board of Directors of Human Variome Project (HVP) International (now known as Global Variome) and is the joint chairman for Global Globin Network (GGN) -- a global project by HVP which involve the systematic collection and sharing of variation data to combat haemoglobinopathies (Thalassemia and Sickle Cell Disease). He is also a member of the Scientific Advisory Committee and the Gene/Disease Specific Database Advisory Council of Human Genome Organisation (HUGO) and the chair of the Genetic Counselling subcommittee of the HUGO Education Committee.
He has served as the Director of USM Human Genome Center from 2005 to 2009. Prof Zilfalil is the chief editor of the Malaysian Journal of Paediatrics and Child Health (MJPCH), which is the official journal of Malaysian Paediatric Association and Malaysian Journal of Human Genetics (MJHG), which is the official journal of the Malaysian Society of Human Genetics. He is a council member of the College of Pediatrics, Academy of Medicine of Malaysia and fellow of this Academy. He is also the founding president of the Malaysian Society of Human Genetics.
After completing my Biomedical Sciences degree in 1989 in UFPA, in Belém – capital of Pará State, I received my M.S. degree in 1993. I completed my Ph.D. at the Post-Graduate Program of Genetics from the hematology department of the University of São Paulo (USP) in Brazil in 1996. I returned to Belém where I continued my research, focusing on human and medical genetics. In 1997, I became a professor at the Federal University of Pará (UFPA) and my main research focus was human variability of Brazilian populations in the Amazon region. In the past 10 years, I have been working with next generation sequencing (NGS) for whole genome sequencing (WGS), exome, transcriptome, etc., especially of urban and traditional individuals from the Amazon region, characterizing disease susceptibility and biomarkers in human populations. The expertise developed by our group allowed us to study the genetics of diseases such as cancer and infectious diseases. I also have explored the interaction between host and pathogen genetic components, describing the interaction between environment and cellular components (DNA, RNA and proteins). My team and I have identified important biomarkers and risk factors of neglected diseases such as leprosy, malaria and tuberculosis by NGS.
I am a statistician by training with strong interactions with the medical field since 1999. Such interactions started during my Undergrad, extended throughout the Master’s and Ph.D. programs, and consolidated with two postdoctoral training opportunities I had in the UK and Brazil (“Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis”, Nature Genetics 2014; “Comprehensive molecular characterization of muscle-invasive bladder cancer”, Cell 2017).
During my professional trajectory, I worked as an intern at Affymetrix in California, with methodologies for preprocessing SNP microarrays. Later, I developed the CRLMM algorithm, a robust and accurate genotyping algorithm for Affymetrix arrays (“Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data”, Biostatistics 2006), which uses a semi-supervised statistical learning approach to obtain genotypes at millions of genomic sites simultaneously. The algorithm was later extended for Illumina chips. I am a Bioconductor developer since 2004, responsible for more than 160 packages, including the oligo and crlmm packages, which accumulate more than 10,000 downloads per year (“Orchestrating high-throughput genomic analysis with Bioconductor”, Nature Methods 2015). The oligo package (“A framework for oligonucleotide microarray preprocessing”, Bioinformatics 2010) is the to-go tool within the Bioconductor framework for Affymetrix and Nimblegen microarray preprocessing.
I develop statistical methodologies and high-performance computational tools for the analysis of high-throughput genomic data and am deeply involved with BioConductor, being one of the pioneer developers at the project and, today, member of the Community Advisory Board at Bioconductor. The research projects I am involved with focus on the understanding of the biological mechanisms involved in epilepsy and stroke, for which I use statistical learning approaches to improve the quality of health care delivery through the neurology department at our University Hospital (“A Prediction Algorithm for Drug Response in Patients With Mesial Temporal Lobe Epilepsy Based on Clinical and Genetic Information”, PLoS One 2017). I am one of the founders of the Brazilian Initiative on Precision Medicine ( “The Brazilian Initiative on Precision Medicine (BIPMed): fostering genomic data-sharing of underrepresented populations”, npg Genomic Medicine 2020), where we generate data, discuss and implement the infra-structure required for the actual execution of Precision Medicine in Brazil, interacting with different stakeholders (including policy makers, patients, researchers and medical doctors) [“Distribution of local ancestry and evidence of adaptation in admixed populations”, Sci. Rep. 2019].
Ivo Fokkema graduated in Molecular Biology in 2002 and started in the group of Johan den Dunnen at the Leiden University Medical Center, the Netherlands, to develop the Leiden Open Variation Database (LOVD) software. It was the world's first software that could be downloaded for free and used to set up an online database to collect and share genetic data. Today, it continues to power the world's largest network of curated gene variant databases.
Ivo currently leads the LOVD project, co-chairs the HUGO Gene/Disease Specific Database Advisory Council, and is a member of the HUGO Nomenclature Standards committee, the HUGO Forum, and the HPV/GV Reporting of Sequence Variants Working Group.
Dr. Juan Llerena Jr is Consultant Clinical Genetics and Director of the Medical Genetics Centre of National Institute Fernandes Figueira, Fiocruz (Rio de Janeiro, Brazil), a maternal-infantile unit of the Brazilian Ministry of Health Department, since 1989.
He trained as a General Practitioner and Internal Medicine with special interests in the fields of dysmorphology and clinical/molecular cytogenetics.
He has co-authored over 150 articles in peer-reviewed journals.
More recently, became Director of The Reference Centre for Rare Disorders in Rio de Janeiro city, through the Fiocruz Foundation.
Dr. Miga is an Assistant Professor in the Biomolecular Engineering Department at UCSC, and an Associate Director of the UCSC Genomics Institute. In 2019, she co-founded the Telomere-to-Telomere (T2T) Consortium, an open, community-based effort to generate the first complete assembly of a human genome. Dr. Miga directs the Reference Production Center for the Human Pangenome Reference Consortium (HPRC), with the goal to broaden the human reference to represent hundreds of diverse genomes from around the world and serve as the foundation for more inclusive and equitable health care in the future. Central to Dr. Miga’s research program is the emphasis on satellite DNA biology and the use of long-read and new genome technologies to construct high-quality genetics and epigenetic maps of human peri/centromeric regions.
completed a Ph.D. in molecular medicine and I wanted to pursue a career path that combined research with disease diagnosis. I am interested in disease research, particularly the elucidation of disease susceptibility genes and setting standards for gene and variant curation. My thesis research focused on factors that differentiate metabolically healthy and unhealthy obese humans. It began with a search of microarray analyses of fat from obese patients undergoing bariatric surgery. These analyses identified the little-studied protein Hypoxia-inducible protein 2 (HIG2) as a highly fat-specific gene in human patients. My research focused on elucidating a role for HIG2 in promoting lipid deposition in liver and adipose tissue, two critical metabolic organs. I used the skills learned during my Ph.D. studies to transition to a field that directly helps patients. Thus, I joined Heidi Rehm’s research program in 2016, working as a postdoctoral fellow on the NIH-funded Clinical Genome Resource (ClinGen) program which is building authoritative resources to define the clinical relevance of genes and variants for use in precision medicine and research (Rehm et al., 2015). ClinGen is spearheading the development and implementation of evidence-based expert curation of genes and variants to meet this aim. Simultaneously, I completed a Clinical Molecular Fellowship in the Harvard Medical School Genetics Training Program and am now a board-certified clinical molecular geneticist and assistant professor at Geisinger. My clinical fellowship focused on exome and genome analysis of rare disease cases. In my role at Geisinger, I continue to collaborate with ClinGen and direct the ClinGen Biocuration Core based at the Broad Institute. This core contains staff curators who are deployed to ClinGen’s 93 gene and variant curation expert panels. Through my work directing this Core, I have trained 15 research assistants to perform gene and variant curation in a range of different disease areas. While much of my initial focus was in the hearing loss domain, I currently collaborate with 15 expert panels as a framework expert. I have coordinated and led specifications in the Congenital Myopathies Variant Curation Expert Panel (VCEP), along with Co-Investigator Dr. Amanda Lindy. I am also a Clinical Lab Director for the Geisinger MyCode-Regeneron DiscovEHR collaboration (MyCode) project and participate in standard setting for variant pipelines and variant classification for confirmation and return of results to MyCode participants. My work with ClinGen expert panels and population screening in MyCode have set me up to succeed in investigating the prevalence, penetrance, and phenotypic variability of Charcot-Marie-Tooth disease in population-based cohorts, particularly the variant interpretation and gene list creation.
Ricardo Verdugo is a Veterinary Medic from the University of Chile (2001). He obtained a Ph.D. in Genetics from the University of California Davis (2007) after completing his thesis work on fine-mapping of QTLs for obesity in mice. Postdoc in Computational Biology in The Jackson Laboratories with Dr. Gary Churchill, where he applied statistical analysis of transcriptomic data from mouse crosses for the inference of gene networks underlying complex traits. A second postdoc at INSERM, where he applied Systems Genetics to human population studies of cardiovascular disease. From 2012 to 2022, he was Assistant Professor at the Human Genetics Program of the University of Chile. He is the Director of the ChileGenomico Project, charactering the genetic diversity of the Chilean population and its relevance for health. He also directs a genomics and a bioinformatics laboratory and leads U-Genoma (ugenoma.cl), a national academic network to support research and graduate level education in genetics, genomics and bioinformatics and the C19-GenoNet multi-centric COVID-19 cohort. Since July 2022, he is group leader at the School of Medicine of the University of Talca, in Talca, Chile.
Robert Kuhn received his PhD in biochemistry and molecular biology at the University of California Santa Barbara, where he studied the centromeres of yeast. Following a postdoctoral fellowship studying photoreceptor genes in plants at UC Berkeley, he taught biochemistry, genetics and molecular biology at the University of California Santa Cruz.
He joined the UCSC Genome Browser project in 2003, retiring as Associate Director in 2022. The Genome Browser is a widely used visualization tool giving access to the genomes of human, model organisms and more than one hundred other animals. Dr. Kuhn's responsibilities included influencing the growth of the Browser, identifying important datasets for inclusion into the Browser and enabling researchers worldwide through teaching the Genome Browser in videos and workshops and seminars, now more than 300 in number (https://bit.ly/kuhnTalks). He has a particular interest in the support of clinical geneticists via online databases and tools for interpreting data.
Dr Kuhn is now operating as Robert Kuhn Consulting, where he continues to offer Browser trainings, bioinformatics consultation and educational materials.
Researcher at National Center for Research in Energy and Materials (CNPEM)/Brazil. Master (2012) and Ph.D. (2017) in Neuroscience at University of Campinas. Postdoctoral fellow at University of California (UCSD). Research focuses on neurodevelopmental diseases, epilepsy, molecular biology, and human stem cell-derived 3D models.
Sonia Margarit, MS. Certified Genetic Counselor graduated from the Sarah Lawrence Genetic Counseling Program in 1997. She worked as a genetic counselor in the areas of prenatal obstetrics and pediatrics at Elmhurst Hospital / Mt. New York Sinai School of Medicine.
In 2004 she moved to Santiago, Chile, to join the genetics team of the Genetics and Genomics Center of the Clínica Alemana Universidad del Desarrollo, becoming the first and only genetic counselor in Chile. Since then, she has taught genetics in Medicine and Health Careers and became an associate professor at the Faculty of Medicine in 2015.
She collaborated in the development of the Breast High-Risk Center at the Clínica Alemana where she worked as a genetic counselor advising hundreds of families at high risk of hereditary cancer. She is currently, providing genetic counseling to patients and families with hereditary syndromes in adults and pediatrics department.
Recognizing the lack of training in genetic counseling she has been keen endeavor promoting the need for training health care providers in genetic counseling. She has collaborated with the development and taught the genetic counseling course in hereditary cancer at the University of Chile (Medichi) at Clínica las Condes.
In 2022, with the support of the Faculty of Medicine and Nursing of Universidad del Desarrollo she helped developed and is the Director of the first genetic counseling online certificate course in Chile.
I combine advanced computational methods with experimental validation techniques in high-resolution genetic mapping populations—an integrative approach called ‘systems genetics’—to elucidate the gene regulatory architecture governing cell fate decisions during early development and quantify the effects of environmental exposures on these processes. My research takes advantage of the powerful Diversity Outbred (DO) and Collaborative Cross (CC) mouse populations, complementary reservoirs of natural genetic perturbations that segregate high genetic diversity with a balanced population structure ideal for high-resolution genetic mapping, to characterize the effects of genetic and environmental perturbations on multiple layers of gene regulation and infer predictive network models underlying cell fate decisions and exposure health risks. This systems genetic approach has enabled me to (1) define the consequences of genetic variation on transcript and protein abundance in the adult liver, and in so doing discover that pervasive transcriptional variation is largely constrained in homeostatic adult tissues at the level of protein abundance by the relative stoichiometry of protein binding partners and complex members, and (2) predict and validate genetic variants that influence multiple layers of gene regulation and affect maintenance of ground state pluripotency in mouse embryonic stem cells. Through my training and research over the past two decades, I have purposefully acquired expertise in developmental biology, complex trait genetics, genomics and proteomics, bioinformatics, and statistics, with the goal of applying this interdisciplinary skillset to dissect and manipulate the gene regulatory networks that drive cell fate processes.
Prof Zilfalil Bin Alwi Professor Zilfalil Bin Alwi is the UNESCO Chair on Human Genetics of Thalassemia. He is a senior consultant Pediatrician & Clinical Geneticist at the Human Genome Centre, School of Medical Sciences, Universiti Sains Malaysia (USM), Kota Bharu, Malaysia.
He received his specialist training in Pediatrics (Master of Medicine (Pediatrics)) from the same university and later went to study at University of Glasgow, United Kingdom (UK) where he obtained a MSc in Medical Genetics and then to University of Aston, UK where he obtained a PhD in Pharmacogenetics.
Prof Zilfalil is the founder and head of the Malaysian Node of the Human Variome Project (MyHVP). He is a member of the Board of Directors of Human Variome Project (HVP) International (now known as Global Variome) and is the joint chairman for Global Globin Network (GGN) -- a global project by HVP which involve the systematic collection and sharing of variation data to combat haemoglobinopathies (Thalassemia and Sickle Cell Disease). He is also a member of the Scientific Advisory Committee and the Gene/Disease Specific Database Advisory Council of Human Genome Organisation (HUGO) and the chair of the Genetic Counselling subcommittee of the HUGO Education Committee.
He has served as the Director of USM Human Genome Center from 2005 to 2009. Prof Zilfalil is the chief editor of the Malaysian Journal of Paediatrics and Child Health (MJPCH), which is the official journal of Malaysian Paediatric Association and Malaysian Journal of Human Genetics (MJHG), which is the official journal of the Malaysian Society of Human Genetics. He is a council member of the College of Pediatrics, Academy of Medicine of Malaysia and fellow of this Academy. He is also the founding president of the Malaysian Society of Human Genetics.